CloneSet13


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
18360.975simple_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
118264
Bio/Data/CodonTable.py
219417
Bio/Data/CodonTable.py
318437
Bio/Data/CodonTable.py
Clone Instance
1
Line Count
18
Source Line
264
Source File
Bio/Data/CodonTable.py

register_ncbi_table(name = "Standard",alt_name = "SGC0",id = 1,table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG":"L","CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = ["TTG","CTG","ATG", ]) 


Clone Instance
2
Line Count
19
Source Line
417
Source File
Bio/Data/CodonTable.py

register_ncbi_table(name = "Bacterial",alt_name = None,id = 11,table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG":"L","CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = ["TTG","CTG","ATT","ATC","ATA","ATG","GTG", ]) 


Clone Instance
3
Line Count
18
Source Line
437
Source File
Bio/Data/CodonTable.py

register_ncbi_table(name = "Alternative Yeast Nuclear",alt_name = None,id = 12,table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG":"S","CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = ["CTG","ATG", ]) 


Clone AbstractionParameter Count: 6Parameter Bindings

register_ncbi_table(name = [[#variable5d6d3340]],alt_name = [[#variable5d6d32e0]],id = [[#variable5d6d3240]],table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG": [[#variable5d6d3180]],"CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = [ [[#variable5d6d31a0]], [[#variable5d6d3120]], ]) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#5d6d3340]]
"Standard" 
12[[#5d6d3340]]
"Bacterial" 
13[[#5d6d3340]]
"Alternative Yeast Nuclear" 
21[[#5d6d32e0]]
"SGC0" 
22[[#5d6d32e0]]
None 
23[[#5d6d32e0]]
None 
31[[#5d6d3240]]
1 
32[[#5d6d3240]]
11 
33[[#5d6d3240]]
12 
41[[#5d6d3180]]
"L" 
42[[#5d6d3180]]
"L" 
43[[#5d6d3180]]
"S" 
51[[#5d6d31a0]]
"TTG","CTG" 
52[[#5d6d31a0]]
"TTG","CTG","ATT","ATC","ATA","ATG" 
53[[#5d6d31a0]]
"CTG" 
61[[#5d6d3120]]
"ATG" 
62[[#5d6d3120]]
"GTG" 
63[[#5d6d3120]]
"ATG"