CloneSet13


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
18	3	6	0.975	simple_stmt

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	18	264	Bio/Data/CodonTable.py
2	19	417	Bio/Data/CodonTable.py
3	18	437	Bio/Data/CodonTable.py

Clone Instance
1

Line Count
18

Source Line
264

Source File

Bio/Data/CodonTable.py

register_ncbi_table(name = "Standard",alt_name = "SGC0",id = 1,table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG":"L","CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = ["TTG","CTG","ATG", ])

Clone Instance
2

Line Count
19

Source Line
417

Source File

Bio/Data/CodonTable.py

register_ncbi_table(name = "Bacterial",alt_name = None,id = 11,table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG":"L","CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = ["TTG","CTG","ATT","ATC","ATA","ATG","GTG", ])

Clone Instance
3

Line Count
18

Source Line
437

Source File

Bio/Data/CodonTable.py

register_ncbi_table(name = "Alternative Yeast Nuclear",alt_name = None,id = 12,table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG":"S","CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = ["CTG","ATG", ])

Clone Abstraction

Parameter Count: 6

Parameter Bindings

register_ncbi_table(name = [[#variable5d6d3340]],alt_name = [[#variable5d6d32e0]],id = [[#variable5d6d3240]],table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG": [[#variable5d6d3180]],"CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = [ [[#variable5d6d31a0]], [[#variable5d6d3120]], ])

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#5d6d3340]]`	"Standard"
1	2	`[[#5d6d3340]]`	"Bacterial"
1	3	`[[#5d6d3340]]`	"Alternative Yeast Nuclear"
2	1	`[[#5d6d32e0]]`	"SGC0"
2	2	`[[#5d6d32e0]]`	None
2	3	`[[#5d6d32e0]]`	None
3	1	`[[#5d6d3240]]`	1
3	2	`[[#5d6d3240]]`	11
3	3	`[[#5d6d3240]]`	12
4	1	`[[#5d6d3180]]`	"L"
4	2	`[[#5d6d3180]]`	"L"
4	3	`[[#5d6d3180]]`	"S"
5	1	`[[#5d6d31a0]]`	"TTG","CTG"
5	2	`[[#5d6d31a0]]`	"TTG","CTG","ATT","ATC","ATA","ATG"
5	3	`[[#5d6d31a0]]`	"CTG"
6	1	`[[#5d6d3120]]`	"ATG"
6	2	`[[#5d6d3120]]`	"GTG"
6	3	`[[#5d6d3120]]`	"ATG"