CloneSet163


Previous CloneSetNext CloneSetBack to Main Report
Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
13260.967file_input_element_list[3]
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
113736
Bio/Data/CodonTable.py
213751
Bio/Data/CodonTable.py
Clone Instance
1
Line Count
13
Source Line
736
Source File
Bio/Data/CodonTable.py

for key,val in  unambiguous_dna_by_name.items( ):
                                                
    ambiguous_dna_by_name[key] = AmbiguousCodonTable(val,IUPAC.ambiguous_dna,IUPACData.ambiguous_dna_values,IUPAC.extended_protein,IUPACData.extended_protein_values) 



ambiguous_dna_by_id = { } 
for key,val in  unambiguous_dna_by_id.items( ):
                                              
    ambiguous_dna_by_id[key] = AmbiguousCodonTable(val,IUPAC.ambiguous_dna,IUPACData.ambiguous_dna_values,IUPAC.extended_protein,IUPACData.extended_protein_values) 


Clone Instance
2
Line Count
13
Source Line
751
Source File
Bio/Data/CodonTable.py

for key,val in  unambiguous_rna_by_name.items( ):
                                                
    ambiguous_rna_by_name[key] = AmbiguousCodonTable(val,IUPAC.ambiguous_rna,IUPACData.ambiguous_rna_values,IUPAC.extended_protein,IUPACData.extended_protein_values) 



ambiguous_rna_by_id = { } 
for key,val in  unambiguous_rna_by_id.items( ):
                                              
    ambiguous_rna_by_id[key] = AmbiguousCodonTable(val,IUPAC.ambiguous_rna,IUPACData.ambiguous_rna_values,IUPAC.extended_protein,IUPACData.extended_protein_values) 





#The following isn't very elegant, but seems to work nicely.


Clone AbstractionParameter Count: 6Parameter Bindings

for key,val in [[#variable774e0b20]].items( ):
   [[#variable774e0ac0]][key] = AmbiguousCodonTable(val,IUPAC. [[#variable78b71a80]],IUPACData. [[#variable774e0120]],IUPAC.extended_protein,IUPACData.extended_protein_values) 
 [[#variable78b71ae0]]= { } 
for key,val in [[#variable7c379700]].items( ):
   [[#variable78b71ae0]][key] = AmbiguousCodonTable(val,IUPAC. [[#variable78b71a80]],IUPACData. [[#variable774e0120]],IUPAC.extended_protein,IUPACData.extended_protein_values) 
  #The following isn't very elegant, but seems to work nicely.
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#774e0b20]]
unambiguous_dna_by_name 
12[[#774e0b20]]
unambiguous_rna_by_name 
21[[#774e0ac0]]
ambiguous_dna_by_name 
22[[#774e0ac0]]
ambiguous_rna_by_name 
31[[#78b71a80]]
ambiguous_dna 
32[[#78b71a80]]
ambiguous_rna 
41[[#774e0120]]
ambiguous_dna_values 
42[[#774e0120]]
ambiguous_rna_values 
51[[#78b71ae0]]
ambiguous_dna_by_id 
52[[#78b71ae0]]
ambiguous_rna_by_id 
61[[#7c379700]]
unambiguous_dna_by_id 
62[[#7c379700]]
unambiguous_rna_by_id