| Previous CloneSet | Next CloneSet | Back to Main Report |
| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 8 | 2 | 4 | 0.972 | compound_stmt |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 10 | 71 | Bio/PopGen/GenePop/EasyController.py |
| 2 | 8 | 82 | Bio/PopGen/GenePop/EasyController.py |
| ||||
def get_heterozygosity_info(self,pop_pos,locus_name):
"""Returns the heterozygosity info for a certain locus on a population.
Returns (Expected homozygotes, observed homozygotes,
Expected heterozygotes, observed heterozygotes)
"""
geno_freqs = self._controller.calc_allele_genotype_freqs(self._fname)
pop_iter,loc_iter = geno_freqs
pops = list(pop_iter)
return pops[pop_pos][1][locus_name][1]
|
| ||||
def get_genotype_count(self,pop_pos,locus_name):
"""Returns the genotype counts for a certain population and locus
"""
geno_freqs = self._controller.calc_allele_genotype_freqs(self._fname)
pop_iter,loc_iter = geno_freqs
pop_iter = list(pop_iter)
return pop_iter[pop_pos][1][locus_name][0]
|
| |||
def [[#variable2e553ce0]](self,pop_pos,locus_name): [[#variable2e552480]] geno_freqs = self._controller.calc_allele_genotype_freqs(self._fname) pop_iter,loc_iter = geno_freqs [[#variable2e552a80]]= list(pop_iter) return [[#variable2e552a80]][pop_pos][1][locus_name][ [[#variable2e553180]]] |
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#2e553ce0]] | get_genotype_count |
| 1 | 2 | [[#2e553ce0]] | get_heterozygosity_info |
| 2 | 1 | [[#2e552480]] | """Returns the genotype counts for a certain population and locus
""" |
| 2 | 2 | [[#2e552480]] | """Returns the heterozygosity info for a certain locus on a population.
Returns (Expected homozygotes, observed homozygotes,
Expected heterozygotes, observed heterozygotes)
""" |
| 3 | 1 | [[#2e552a80]] | pop_iter |
| 3 | 2 | [[#2e552a80]] | pops |
| 4 | 1 | [[#2e553180]] | 0 |
| 4 | 2 | [[#2e553180]] | 1 |