CloneSet85


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
8220.951stmt_list[4]
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
18147
Bio/SeqIO/_convert.py
29180
Bio/SeqIO/_convert.py
Clone Instance
1
Line Count
8
Source Line
147
Source File
Bio/SeqIO/_convert.py

    #Map unexpected chars to null
    trunc_char = chr(1) 
    mapping = "".join([chr(0) for ascii in range(0,33)]+[chr(64+q) for q in range(0,62+1)]+[trunc_char for ascii in range(96,127)]+[chr(0) for ascii in range(127,256)]) 



    assert len(mapping)==256 
    return _fastq_generic2(in_handle,out_handle,mapping,trunc_char,"Data loss - max PHRED quality 62 in Illumina 1.3+ FASTQ") 


Clone Instance
2
Line Count
9
Source Line
180
Source File
Bio/SeqIO/_convert.py

    trunc_char = chr(1) 
    mapping = "".join([chr(0) for ascii in range(0,33)]+[chr(64+int(round(solexa_quality_from_phred(q))))
                                                         for q in range(0,62+1)]+[trunc_char for ascii in range(96,127)]+[chr(0) for ascii in range(127,256)]) 



    assert len(mapping)==256 
    return _fastq_generic2(in_handle,out_handle,mapping,trunc_char,"Data loss - max Solexa quality 62 in Solexa FASTQ") 


Clone AbstractionParameter Count: 2Parameter Bindings

#Map unexpected chars to null
trunc_char = chr(1) 
mapping = "".join([chr(0) for ascii in range(0,33)]+[chr(64+ [[#variable5f4b3de0]]) for q in range(0,62+1)]+[trunc_char for ascii in range(96,127)]+[chr(0) for ascii in range(127,256)]) 
assert len(mapping)==256 
return _fastq_generic2(in_handle,out_handle,mapping,trunc_char, [[#variable5f904d80]]) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#5f4b3de0]]
q 
12[[#5f4b3de0]]
int(round(solexa_quality_from_phred(q))) 
21[[#5f904d80]]
"Data loss - max PHRED quality 62 in Illumina 1.3+ FASTQ" 
22[[#5f904d80]]
"Data loss - max Solexa quality 62 in Solexa FASTQ"