CloneSet96


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
21	2	3	0.986	stmt_list[4]

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	21	1445	Bio/Blast/NCBIStandalone.py
2	21	1501	Bio/Blast/NCBIStandalone.py

Clone Instance
1

Line Count
21

Source Line
1445

Source File

Bio/Blast/NCBIStandalone.py

    def end_alignment(self): 
         _AlignmentConsumer.end_alignment(self) 
         if self._alignment.hsps: 
              self.data.alignments.append(self._alignment) 
         if self._multiple_alignment.alignment: 
              self.data.multiple_alignment = self._multiple_alignment 
         

    def end_hsp(self): 
         _HSPConsumer.end_hsp(self) 
         try :
             
             self._alignment.hsps.append(self._hsp) 
         except AttributeError: 
              raise ValueError("Found an HSP before an alignment") 
         

    def end_database_report(self): 
         _DatabaseReportConsumer.end_database_report(self) 
         self.data.__dict__.update(self._dr.__dict__) 

    def end_parameters(self): 
         _ParametersConsumer.end_parameters(self) 
         self.data.__dict__.update(self._params.__dict__)

Clone Instance
2

Line Count
21

Source Line
1501

Source File

Bio/Blast/NCBIStandalone.py

    def end_alignment(self): 
         _AlignmentConsumer.end_alignment(self) 
         if self._alignment.hsps: 
              self._round.alignments.append(self._alignment) 
         if self._multiple_alignment: 
              self._round.multiple_alignment = self._multiple_alignment 
         

    def end_hsp(self): 
         _HSPConsumer.end_hsp(self) 
         try :
             
             self._alignment.hsps.append(self._hsp) 
         except AttributeError: 
              raise ValueError("Found an HSP before an alignment") 
         

    def end_database_report(self): 
         _DatabaseReportConsumer.end_database_report(self) 
         self.data.__dict__.update(self._dr.__dict__) 

    def end_parameters(self): 
         _ParametersConsumer.end_parameters(self) 
         self.data.__dict__.update(self._params.__dict__)

Clone Abstraction

Parameter Count: 3

Parameter Bindings

def end_alignment(self):
  _AlignmentConsumer.end_alignment(self) 
  if self._alignment.hsps:
  
    self. [[#variable195f09e0]].alignments.append(self._alignment) 
  if [[#variable5d77e6e0]]. [[#variable77a2ac60]]:
  
    self. [[#variable195f09e0]].multiple_alignment = self._multiple_alignment 
  

def end_hsp(self):
  _HSPConsumer.end_hsp(self) 
  try :
  
    self._alignment.hsps.append(self._hsp) 
  except AttributeError:
  
    raise ValueError("Found an HSP before an alignment") 
  

def end_database_report(self):
  _DatabaseReportConsumer.end_database_report(self) 
  self.data.__dict__.update(self._dr.__dict__) 

def end_parameters(self):
  _ParametersConsumer.end_parameters(self) 
  self.data.__dict__.update(self._params.__dict__)

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#195f09e0]]`	data
1	2	`[[#195f09e0]]`	_round
2	1	`[[#5d77e6e0]]`	self._multiple_alignment
2	2	`[[#5d77e6e0]]`	self
3	1	`[[#77a2ac60]]`	alignment
3	2	`[[#77a2ac60]]`	_multiple_alignment