CloneSet96


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
21230.986stmt_list[4]
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
1211445
Bio/Blast/NCBIStandalone.py
2211501
Bio/Blast/NCBIStandalone.py
Clone Instance
1
Line Count
21
Source Line
1445
Source File
Bio/Blast/NCBIStandalone.py

    def end_alignment(self): 
         _AlignmentConsumer.end_alignment(self) 
         if self._alignment.hsps: 
              self.data.alignments.append(self._alignment) 
         if self._multiple_alignment.alignment: 
              self.data.multiple_alignment = self._multiple_alignment 
         

    def end_hsp(self): 
         _HSPConsumer.end_hsp(self) 
         try :
             
             self._alignment.hsps.append(self._hsp) 
         except AttributeError: 
              raise ValueError("Found an HSP before an alignment") 
         

    def end_database_report(self): 
         _DatabaseReportConsumer.end_database_report(self) 
         self.data.__dict__.update(self._dr.__dict__) 

    def end_parameters(self): 
         _ParametersConsumer.end_parameters(self) 
         self.data.__dict__.update(self._params.__dict__) 


Clone Instance
2
Line Count
21
Source Line
1501
Source File
Bio/Blast/NCBIStandalone.py

    def end_alignment(self): 
         _AlignmentConsumer.end_alignment(self) 
         if self._alignment.hsps: 
              self._round.alignments.append(self._alignment) 
         if self._multiple_alignment: 
              self._round.multiple_alignment = self._multiple_alignment 
         

    def end_hsp(self): 
         _HSPConsumer.end_hsp(self) 
         try :
             
             self._alignment.hsps.append(self._hsp) 
         except AttributeError: 
              raise ValueError("Found an HSP before an alignment") 
         

    def end_database_report(self): 
         _DatabaseReportConsumer.end_database_report(self) 
         self.data.__dict__.update(self._dr.__dict__) 

    def end_parameters(self): 
         _ParametersConsumer.end_parameters(self) 
         self.data.__dict__.update(self._params.__dict__) 


Clone AbstractionParameter Count: 3Parameter Bindings

def end_alignment(self):
  _AlignmentConsumer.end_alignment(self) 
  if self._alignment.hsps:
  
    self. [[#variable195f09e0]].alignments.append(self._alignment) 
  if [[#variable5d77e6e0]]. [[#variable77a2ac60]]:
  
    self. [[#variable195f09e0]].multiple_alignment = self._multiple_alignment 
  

def end_hsp(self):
  _HSPConsumer.end_hsp(self) 
  try :
  
    self._alignment.hsps.append(self._hsp) 
  except AttributeError:
  
    raise ValueError("Found an HSP before an alignment") 
  

def end_database_report(self):
  _DatabaseReportConsumer.end_database_report(self) 
  self.data.__dict__.update(self._dr.__dict__) 

def end_parameters(self):
  _ParametersConsumer.end_parameters(self) 
  self.data.__dict__.update(self._params.__dict__) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#195f09e0]]
data 
12[[#195f09e0]]
_round 
21[[#5d77e6e0]]
self._multiple_alignment 
22[[#5d77e6e0]]
self 
31[[#77a2ac60]]
alignment 
32[[#77a2ac60]]
_multiple_alignment