| Previous CloneSet | Next CloneSet | Back to Main Report |
| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 21 | 2 | 0 | 1.000 | file_input_element_list[4] |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 20 | 218 | Bio/SeqUtils/__init__.py |
| 2 | 21 | 24 | Scripts/xbbtools/nextorf.py |
| ||||
class ProteinX(Alphabet.ProteinAlphabet):
letters = IUPACData.extended_protein_letters+"X"
proteinX = ProteinX( )
class MissingTable:
def __init__(self,table):
self._table = table
def get(self,codon,stop_symbol):
try :
return self._table.get(codon,stop_symbol)
except CodonTable.TranslationError:
return "X"
def makeTableX(table):
assert table.protein_alphabet==IUPAC.extended_protein
return CodonTable.CodonTable(table.nucleotide_alphabet,proteinX,MissingTable(table.forward_table),table.back_table,table.start_codons,table.stop_codons)
# end of hacks
|
| ||||
class ProteinX(Alphabet.ProteinAlphabet):
letters = IUPACData.extended_protein_letters+"X"
proteinX = ProteinX( )
class MissingTable:
def __init__(self,table):
self._table = table
def get(self,codon,stop_symbol):
try :
return self._table.get(codon,stop_symbol)
except CodonTable.TranslationError:
return "X"
# Make the codon table given an existing table
def makeTableX(table):
assert table.protein_alphabet==IUPAC.extended_protein
return CodonTable.CodonTable(table.nucleotide_alphabet,proteinX,MissingTable(table.forward_table),table.back_table,table.start_codons,table.stop_codons)
|
| |||
class ProteinX(Alphabet.ProteinAlphabet):
letters = IUPACData.extended_protein_letters+"X"
proteinX = ProteinX( )
class MissingTable:
def __init__(self,table):
self._table = table
def get(self,codon,stop_symbol):
try :
return self._table.get(codon,stop_symbol)
except CodonTable.TranslationError:
return "X"
# Make the codon table given an existing table
def makeTableX(table):
assert table.protein_alphabet==IUPAC.extended_protein
return CodonTable.CodonTable(table.nucleotide_alphabet,proteinX,MissingTable(table.forward_table),table.back_table,table.start_codons,table.stop_codons)
# end of hacks
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| None | |||