CloneSet195


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
6250.976stmt_list[6]
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
16342
Bio/AlignIO/ClustalIO.py
26356
Bio/AlignIO/ClustalIO.py
Clone Instance
1
Line Count
6
Source Line
342
Source File
Bio/AlignIO/ClustalIO.py

    alignments = list(ClustalIterator(StringIO(aln_example1))) 
    assert 1==len(alignments) 
    assert alignments[0]._version=="1.81" 
    records = alignments[0].get_all_seqs( ) 
    assert 2==len(records) 
    assert records[0].id=="gi|4959044|gb|AAD34209.1|AF069" 


Clone Instance
2
Line Count
6
Source Line
356
Source File
Bio/AlignIO/ClustalIO.py

    alignments = list(ClustalIterator(StringIO(aln_example2))) 
    assert 1==len(alignments) 
    assert alignments[0]._version=="1.83" 
    records = alignments[0].get_all_seqs( ) 
    assert 9==len(records) 
    assert records[ -1].id=="HISJ_E_COLI" 


Clone AbstractionParameter Count: 5Parameter Bindings

alignments = list(ClustalIterator(StringIO( [[#variable1ae4da00]]))) 
assert 1==len(alignments) 
assert alignments[0]._version== [[#variable2ff0a040]]
records = alignments[0].get_all_seqs( ) 
assert [[#variable2ff0a000]]==len(records) 
assert records[ [[#variable1a624680]]].id== [[#variable5c2f9500]]
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#1ae4da00]]
aln_example1 
12[[#1ae4da00]]
aln_example2 
21[[#2ff0a040]]
"1.81" 
22[[#2ff0a040]]
"1.83" 
31[[#2ff0a000]]
2 
32[[#2ff0a000]]
9 
41[[#1a624680]]
0 
42[[#1a624680]]
-1 
51[[#5c2f9500]]
"gi|4959044|gb|AAD34209.1|AF069" 
52[[#5c2f9500]]
"HISJ_E_COLI"