CloneSet213


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
14	2	3	0.982	compound_stmt

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	14	14	Bio/utils.py
2	14	29	Bio/utils.py

Clone Instance
1

Line Count
14

Source Line
14

Source File

Bio/utils.py

def translate(seq,id = None): 
    "Translate a sequence (DEPRECATED)." 
    import warnings 
    warnings.warn("Bio.utils.translate() has been deprecated, and we"+" intend to remove it in a future release of Biopython."+" Please use the translate method or function in Bio.Seq"+" instead, as described in the Tutorial.",DeprecationWarning) 




    if id is None: 
         s = "translator" 
    else: 
         s = "translator.id.%d"%id 
    translator = default_manager.resolve(seq.alphabet,s) 
    return translator.translate(seq)

Clone Instance
2

Line Count
14

Source Line
29

Source File

Bio/utils.py

def translate_to_stop(seq,id = None): 
    "Translate a sequence up to the first in frame stop codon (DEPRECATED)." 
    import warnings 
    warnings.warn("Bio.utils.translate_to_stop() has been deprecated, and we"+" intend to remove it in a future release of Biopython."+" Please use the translate method or function in Bio.Seq"+" instead, as described in the Tutorial.",DeprecationWarning) 




    if id is None: 
         s = "translator" 
    else: 
         s = "translator.id.%d"%id 
    translator = default_manager.resolve(seq.alphabet,s) 
    return translator.translate_to_stop(seq)

Clone Abstraction

Parameter Count: 3

Parameter Bindings

def [[#variable19feb180]](seq,id = None):
   [[#variable19feb100]]
  import warnings 
  warnings.warn( [[#variable19feaea0]]+" intend to remove it in a future release of Biopython."+" Please use the translate method or function in Bio.Seq"+" instead, as described in the Tutorial.",DeprecationWarning) 
  if id is None:
  
    s = "translator" 
  else:
  
    s = "translator.id.%d"%id 
  translator = default_manager.resolve(seq.alphabet,s) 
  return translator. [[#variable19feb180]](seq)

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#19feb180]]`	translate_to_stop
1	2	`[[#19feb180]]`	translate
2	1	`[[#19feb100]]`	"Translate a sequence up to the first in frame stop codon (DEPRECATED)."
2	2	`[[#19feb100]]`	"Translate a sequence (DEPRECATED)."
3	1	`[[#19feaea0]]`	"Bio.utils.translate_to_stop() has been deprecated, and we"
3	2	`[[#19feaea0]]`	"Bio.utils.translate() has been deprecated, and we"