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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 4 | 2 | 6 | 0.971 | test_plus |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 4 | 297 | Bio/Emboss/Applications.py |
| 2 | 4 | 347 | Bio/Emboss/Applications.py |
| ||||
_Option(["-msf","msf"],["input","file"],None,1,"Sequences file to be read in"),_Option(["-besttree","besttree"],["input"],None,0,"Search for the best tree") |
| ||||
_Option(["-infile","infile"],["input","file"],None,1,"file to read in (New Hampshire standard form)"),_Option(["-notrout","notrout"],["input"],None,0,"Do not create a tree file") |
| |||
_Option([ [[#variable2eca84a0]], [[#variable2eca8440]]],["input","file"],None,1, [[#variable2eca83c0]]),_Option([ [[#variable2eca8340]], [[#variable2eca82c0]]],["input"],None,0, [[#variable2eca8240]]) |
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#2eca84a0]] | "-msf" |
| 1 | 2 | [[#2eca84a0]] | "-infile" |
| 2 | 1 | [[#2eca8440]] | "msf" |
| 2 | 2 | [[#2eca8440]] | "infile" |
| 3 | 1 | [[#2eca83c0]] | "Sequences file to be read in" |
| 3 | 2 | [[#2eca83c0]] | "file to read in (New Hampshire standard form)" |
| 4 | 1 | [[#2eca8340]] | "-besttree" |
| 4 | 2 | [[#2eca8340]] | "-notrout" |
| 5 | 1 | [[#2eca82c0]] | "besttree" |
| 5 | 2 | [[#2eca82c0]] | "notrout" |
| 6 | 1 | [[#2eca8240]] | "Search for the best tree" |
| 6 | 2 | [[#2eca8240]] | "Do not create a tree file" |