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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 17 | 2 | 2 | 0.983 | compound_stmt |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 17 | 996 | Bio/Seq.py |
| 2 | 17 | 1014 | Bio/Seq.py |
| ||||
def complement(self):
"""The complement of an unknown nucleotide equals itself.
>>> my_nuc = UnknownSeq(8)
>>> my_nuc
UnknownSeq(8, alphabet = Alphabet(), character = '?')
>>> print my_nuc
????????
>>> my_nuc.complement()
UnknownSeq(8, alphabet = Alphabet(), character = '?')
>>> print my_nuc.complement()
????????
"""
if isinstance(Alphabet._get_base_alphabet(self.alphabet),Alphabet.ProteinAlphabet):
raise ValueError("Proteins do not have complements!")
return self
|
| ||||
def reverse_complement(self):
"""The reverse complement of an unknown nucleotide equals itself.
>>> my_nuc = UnknownSeq(10)
>>> my_nuc
UnknownSeq(10, alphabet = Alphabet(), character = '?')
>>> print my_nuc
??????????
>>> my_nuc.reverse_complement()
UnknownSeq(10, alphabet = Alphabet(), character = '?')
>>> print my_nuc.reverse_complement()
??????????
"""
if isinstance(Alphabet._get_base_alphabet(self.alphabet),Alphabet.ProteinAlphabet):
raise ValueError("Proteins do not have complements!")
return self
|
| |||
def [[#variable7c3e8980]](self):
[[#variable7c3e8c80]]
if isinstance(Alphabet._get_base_alphabet(self.alphabet),Alphabet.ProteinAlphabet):
raise ValueError("Proteins do not have complements!")
return self
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#7c3e8980]] | reverse_complement |
| 1 | 2 | [[#7c3e8980]] | complement |
| 2 | 1 | [[#7c3e8c80]] | """The reverse complement of an unknown nucleotide equals itself.
>>> my_nuc = UnknownSeq(10)
>>> my_nuc
UnknownSeq(10, alphabet = Alphabet(), character = '?')
>>> print my_nuc
??????????
>>> my_nuc.reverse_complement()
UnknownSeq(10, alphabet = Alphabet(), character = '?')
>>> print my_nuc.reverse_complement()
??????????
""" |
| 2 | 2 | [[#7c3e8c80]] | """The complement of an unknown nucleotide equals itself.
>>> my_nuc = UnknownSeq(8)
>>> my_nuc
UnknownSeq(8, alphabet = Alphabet(), character = '?')
>>> print my_nuc
????????
>>> my_nuc.complement()
UnknownSeq(8, alphabet = Alphabet(), character = '?')
>>> print my_nuc.complement()
????????
""" |