CloneSet65


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
10360.983elif_clause
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
11077
Bio/Emboss/Primer3.py
21087
Bio/Emboss/Primer3.py
31097
Bio/Emboss/Primer3.py
Clone Instance
1
Line Count
10
Source Line
77
Source File
Bio/Emboss/Primer3.py

        elif line[5:19]=="FORWARD PRIMER": 
             words = line.split( ) 
             if not primer or primer.size==0: 
                  primer = Primers( ) 
                  record.primers.append(primer) 
             primer.forward_start = int(words[2]) 
             primer.forward_length = int(words[3]) 
             primer.forward_tm = float(words[4]) 
             primer.forward_gc = float(words[5]) 
             primer.forward_seq = words[6] 


Clone Instance
2
Line Count
10
Source Line
87
Source File
Bio/Emboss/Primer3.py

        elif line[5:19]=="REVERSE PRIMER": 
             words = line.split( ) 
             if not primer or primer.size==0: 
                  primer = Primers( ) 
                  record.primers.append(primer) 
             primer.reverse_start = int(words[2]) 
             primer.reverse_length = int(words[3]) 
             primer.reverse_tm = float(words[4]) 
             primer.reverse_gc = float(words[5]) 
             primer.reverse_seq = words[6] 


Clone Instance
3
Line Count
10
Source Line
97
Source File
Bio/Emboss/Primer3.py

        elif line[5:19]=="INTERNAL OLIGO": 
             words = line.split( ) 
             if not primer or primer.size==0: 
                  primer = Primers( ) 
                  record.primers.append(primer) 
             primer.internal_start = int(words[2]) 
             primer.internal_length = int(words[3]) 
             primer.internal_tm = float(words[4]) 
             primer.internal_gc = float(words[5]) 
             primer.internal_seq = words[6] 


Clone AbstractionParameter Count: 6Parameter Bindings

elif line[5:19]== [[#variable77c04220]]:
  words = line.split( ) 
  if not primer or primer.size==0:
  
    primer = Primers( ) 
    record.primers.append(primer) 
  primer. [[#variable77c04180]]= int(words[2]) 
  primer. [[#variable77c04120]]= int(words[3]) 
  primer. [[#variable77c040a0]]= float(words[4]) 
  primer. [[#variable77c04040]]= float(words[5]) 
  primer. [[#variable19d8ffa0]]= words[6] 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#77c04220]]
"INTERNAL OLIGO" 
12[[#77c04220]]
"REVERSE PRIMER" 
13[[#77c04220]]
"FORWARD PRIMER" 
21[[#77c04180]]
internal_start 
22[[#77c04180]]
reverse_start 
23[[#77c04180]]
forward_start 
31[[#77c04120]]
internal_length 
32[[#77c04120]]
reverse_length 
33[[#77c04120]]
forward_length 
41[[#77c040a0]]
internal_tm 
42[[#77c040a0]]
reverse_tm 
43[[#77c040a0]]
forward_tm 
51[[#77c04040]]
internal_gc 
52[[#77c04040]]
reverse_gc 
53[[#77c04040]]
forward_gc 
61[[#19d8ffa0]]
internal_seq 
62[[#19d8ffa0]]
reverse_seq 
63[[#19d8ffa0]]
forward_seq