CloneSet65


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
10	3	6	0.983	elif_clause

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	10	77	Bio/Emboss/Primer3.py
2	10	87	Bio/Emboss/Primer3.py
3	10	97	Bio/Emboss/Primer3.py

Clone Instance
1

Line Count
10

Source Line
77

Source File

Bio/Emboss/Primer3.py

        elif line[5:19]=="FORWARD PRIMER": 
             words = line.split( ) 
             if not primer or primer.size==0: 
                  primer = Primers( ) 
                  record.primers.append(primer) 
             primer.forward_start = int(words[2]) 
             primer.forward_length = int(words[3]) 
             primer.forward_tm = float(words[4]) 
             primer.forward_gc = float(words[5]) 
             primer.forward_seq = words[6]

Clone Instance
2

Line Count
10

Source Line
87

Source File

Bio/Emboss/Primer3.py

        elif line[5:19]=="REVERSE PRIMER": 
             words = line.split( ) 
             if not primer or primer.size==0: 
                  primer = Primers( ) 
                  record.primers.append(primer) 
             primer.reverse_start = int(words[2]) 
             primer.reverse_length = int(words[3]) 
             primer.reverse_tm = float(words[4]) 
             primer.reverse_gc = float(words[5]) 
             primer.reverse_seq = words[6]

Clone Instance
3

Line Count
10

Source Line
97

Source File

Bio/Emboss/Primer3.py

        elif line[5:19]=="INTERNAL OLIGO": 
             words = line.split( ) 
             if not primer or primer.size==0: 
                  primer = Primers( ) 
                  record.primers.append(primer) 
             primer.internal_start = int(words[2]) 
             primer.internal_length = int(words[3]) 
             primer.internal_tm = float(words[4]) 
             primer.internal_gc = float(words[5]) 
             primer.internal_seq = words[6]

Clone Abstraction

Parameter Count: 6

Parameter Bindings

elif line[5:19]== [[#variable77c04220]]:
  words = line.split( ) 
  if not primer or primer.size==0:
  
    primer = Primers( ) 
    record.primers.append(primer) 
  primer. [[#variable77c04180]]= int(words[2]) 
  primer. [[#variable77c04120]]= int(words[3]) 
  primer. [[#variable77c040a0]]= float(words[4]) 
  primer. [[#variable77c04040]]= float(words[5]) 
  primer. [[#variable19d8ffa0]]= words[6]

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#77c04220]]`	"INTERNAL OLIGO"
1	2	`[[#77c04220]]`	"REVERSE PRIMER"
1	3	`[[#77c04220]]`	"FORWARD PRIMER"
2	1	`[[#77c04180]]`	internal_start
2	2	`[[#77c04180]]`	reverse_start
2	3	`[[#77c04180]]`	forward_start
3	1	`[[#77c04120]]`	internal_length
3	2	`[[#77c04120]]`	reverse_length
3	3	`[[#77c04120]]`	forward_length
4	1	`[[#77c040a0]]`	internal_tm
4	2	`[[#77c040a0]]`	reverse_tm
4	3	`[[#77c040a0]]`	forward_tm
5	1	`[[#77c04040]]`	internal_gc
5	2	`[[#77c04040]]`	reverse_gc
5	3	`[[#77c04040]]`	forward_gc
6	1	`[[#19d8ffa0]]`	internal_seq
6	2	`[[#19d8ffa0]]`	reverse_seq
6	3	`[[#19d8ffa0]]`	forward_seq