CloneSet163


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
13	2	6	0.967	file_input_element_list[3]

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	13	736	Bio/Data/CodonTable.py
2	13	751	Bio/Data/CodonTable.py

Clone Instance
1

Line Count
13

Source Line
736

Source File

Bio/Data/CodonTable.py

for key,val in  unambiguous_dna_by_name.items( ):
                                                
    ambiguous_dna_by_name[key] = AmbiguousCodonTable(val,IUPAC.ambiguous_dna,IUPACData.ambiguous_dna_values,IUPAC.extended_protein,IUPACData.extended_protein_values) 



ambiguous_dna_by_id = { } 
for key,val in  unambiguous_dna_by_id.items( ):
                                              
    ambiguous_dna_by_id[key] = AmbiguousCodonTable(val,IUPAC.ambiguous_dna,IUPACData.ambiguous_dna_values,IUPAC.extended_protein,IUPACData.extended_protein_values)

Clone Instance
2

Line Count
13

Source Line
751

Source File

Bio/Data/CodonTable.py

for key,val in  unambiguous_rna_by_name.items( ):
                                                
    ambiguous_rna_by_name[key] = AmbiguousCodonTable(val,IUPAC.ambiguous_rna,IUPACData.ambiguous_rna_values,IUPAC.extended_protein,IUPACData.extended_protein_values) 



ambiguous_rna_by_id = { } 
for key,val in  unambiguous_rna_by_id.items( ):
                                              
    ambiguous_rna_by_id[key] = AmbiguousCodonTable(val,IUPAC.ambiguous_rna,IUPACData.ambiguous_rna_values,IUPAC.extended_protein,IUPACData.extended_protein_values) 





#The following isn't very elegant, but seems to work nicely.

Clone Abstraction

Parameter Count: 6

Parameter Bindings

for key,val in [[#variable774e0b20]].items( ):
   [[#variable774e0ac0]][key] = AmbiguousCodonTable(val,IUPAC. [[#variable78b71a80]],IUPACData. [[#variable774e0120]],IUPAC.extended_protein,IUPACData.extended_protein_values) 
 [[#variable78b71ae0]]= { } 
for key,val in [[#variable7c379700]].items( ):
   [[#variable78b71ae0]][key] = AmbiguousCodonTable(val,IUPAC. [[#variable78b71a80]],IUPACData. [[#variable774e0120]],IUPAC.extended_protein,IUPACData.extended_protein_values) 
  #The following isn't very elegant, but seems to work nicely.

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#774e0b20]]`	unambiguous_dna_by_name
1	2	`[[#774e0b20]]`	unambiguous_rna_by_name
2	1	`[[#774e0ac0]]`	ambiguous_dna_by_name
2	2	`[[#774e0ac0]]`	ambiguous_rna_by_name
3	1	`[[#78b71a80]]`	ambiguous_dna
3	2	`[[#78b71a80]]`	ambiguous_rna
4	1	`[[#774e0120]]`	ambiguous_dna_values
4	2	`[[#774e0120]]`	ambiguous_rna_values
5	1	`[[#78b71ae0]]`	ambiguous_dna_by_id
5	2	`[[#78b71ae0]]`	ambiguous_rna_by_id
6	1	`[[#7c379700]]`	unambiguous_dna_by_id
6	2	`[[#7c379700]]`	unambiguous_rna_by_id