CloneSet41


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
14	4	6	0.972	test_pair_plus

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	14	573	Bio/Restriction/Restriction_Dictionary.py
2	14	1266	Bio/Restriction/Restriction_Dictionary.py
3	14	3450	Bio/Restriction/Restriction_Dictionary.py
4	14	9525	Bio/Restriction/Restriction_Dictionary.py

Clone Instance
1

Line Count
14

Source Line
573

Source File

Bio/Restriction/Restriction_Dictionary.py

          "charac":( -7, -25,25,7,"GAACNNNNNNTCC"),"compsite":"(?P<AloI>GAAC......TCC)|(?P<AloI_as>GGA......GTTC)","dna":None,"freq":16384,"fst3": -25,"fst5": -7,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5":25,"site":"GAACNNNNNNTCC"

Clone Instance
2

Line Count
14

Source Line
1266

Source File

Bio/Restriction/Restriction_Dictionary.py

          "charac":( -10, -26,23,7,"ACNNNNGTAYC"),"compsite":"(?P<BaeI>AC....GTA[CT]C)|(?P<BaeI_as>G[AG]TAC....GT)","dna":None,"freq":8192,"fst3": -26,"fst5": -10,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5":23,"site":"ACNNNNGTAYC"

Clone Instance
3

Line Count
14

Source Line
3450

Source File

Bio/Restriction/Restriction_Dictionary.py

            "charac":( -8, -25,24,7,"GACNNNNNNTGG"),"compsite":"(?P<Bsp24I>GAC......TGG)|(?P<Bsp24I_as>CCA......GTC)","dna":None,"freq":4096,"fst3": -25,"fst5": -8,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5":24,"site":"GACNNNNNNTGG"

Clone Instance
4

Line Count
14

Source Line
9525

Source File

Bio/Restriction/Restriction_Dictionary.py

          "charac":( -7, -25,25,7,"GAACNNNNNNTAC"),"compsite":"(?P<PsrI>GAAC......TAC)|(?P<PsrI_as>GTA......GTTC)","dna":None,"freq":16384,"fst3": -25,"fst5": -7,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5":25,"site":"GAACNNNNNNTAC"

Clone Abstraction

Parameter Count: 6

Parameter Bindings

"charac":( - [[#variable7546ee00]], - [[#variable7546ed60]], [[#variable7546ecc0]],7, [[#variable7546ec60]]),"compsite": [[#variable7546ebe0]],"dna":None,"freq": [[#variable7546e7e0]],"fst3": - [[#variable7546ed60]],"fst5": - [[#variable7546ee00]],"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5": [[#variable7546ecc0]],"site": [[#variable7546ec60]]

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#7546ee00]]`	7
1	2	`[[#7546ee00]]`	10
1	3	`[[#7546ee00]]`	8
1	4	`[[#7546ee00]]`	7
2	1	`[[#7546ed60]]`	25
2	2	`[[#7546ed60]]`	26
2	3	`[[#7546ed60]]`	25
2	4	`[[#7546ed60]]`	25
3	1	`[[#7546ecc0]]`	25
3	2	`[[#7546ecc0]]`	23
3	3	`[[#7546ecc0]]`	24
3	4	`[[#7546ecc0]]`	25
4	1	`[[#7546ec60]]`	"GAACNNNNNNTCC"
4	2	`[[#7546ec60]]`	"ACNNNNGTAYC"
4	3	`[[#7546ec60]]`	"GACNNNNNNTGG"
4	4	`[[#7546ec60]]`	"GAACNNNNNNTAC"
5	1	`[[#7546ebe0]]`	"(?P<AloI>GAAC......TCC)\|(?P<AloI_as>GGA......GTTC)"
5	2	`[[#7546ebe0]]`	"(?P<BaeI>AC....GTA[CT]C)\|(?P<BaeI_as>G[AG]TAC....GT)"
5	3	`[[#7546ebe0]]`	"(?P<Bsp24I>GAC......TGG)\|(?P<Bsp24I_as>CCA......GTC)"
5	4	`[[#7546ebe0]]`	"(?P<PsrI>GAAC......TAC)\|(?P<PsrI_as>GTA......GTTC)"
6	1	`[[#7546e7e0]]`	16384
6	2	`[[#7546e7e0]]`	8192
6	3	`[[#7546e7e0]]`	4096
6	4	`[[#7546e7e0]]`	16384