CloneSet92


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
17	2	0	1.000	stmt_list[4]

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	17	90	Bio/Align/AlignInfo.py
2	17	146	Bio/Align/AlignInfo.py

Clone Instance
1

Line Count
17

Source Line
90

Source File

Bio/Align/AlignInfo.py

            max_atoms = [ ] 
            max_size = 0 

            for atom in atom_dict.keys( ):
                                         
                if atom_dict[atom]>max_size:  
                    max_atoms = [atom] 
                    max_size = atom_dict[atom] 
                elif atom_dict[atom]==max_size:  
                    max_atoms.append(atom) 
                
            if require_multiple and num_atoms==1:  
                consensus = consensus+ambiguous 
            elif (len(max_atoms)==1) and   ((float(max_size)/float(num_atoms))>=threshold):
                                                       
                consensus = consensus+max_atoms[0] 
            else: 
                 consensus = consensus+ambiguous 

         # we need to guess a consensus alphabet if one isn't specified

Clone Instance
2

Line Count
17

Source Line
146

Source File

Bio/Align/AlignInfo.py

            max_atoms = [ ] 
            max_size = 0 

            for atom in atom_dict.keys( ):
                                         
                if atom_dict[atom]>max_size:  
                    max_atoms = [atom] 
                    max_size = atom_dict[atom] 
                elif atom_dict[atom]==max_size:  
                    max_atoms.append(atom) 
                
            if require_multiple and num_atoms==1:  
                consensus = consensus+ambiguous 
            elif (len(max_atoms)==1) and   ((float(max_size)/float(num_atoms))>=threshold):
                                                       
                consensus = consensus+max_atoms[0] 
            else: 
                 consensus = consensus+ambiguous 

         # we need to guess a consensus alphabet if one isn't specified

Clone Abstraction

Parameter Count: 0

Parameter Bindings

max_atoms = [ ] 
max_size = 0 
for atom in atom_dict.keys( ):
  if atom_dict[atom]>max_size:
  
    max_atoms = [atom] 
    max_size = atom_dict[atom] 
  elif atom_dict[atom]==max_size:
  
    max_atoms.append(atom) 
  
if require_multiple and num_atoms==1:
  consensus = consensus+ambiguous 
elif (len(max_atoms)==1) and ((float(max_size)/float(num_atoms))>=threshold):
  consensus = consensus+max_atoms[0] 
else:
  consensus = consensus+ambiguous 
  # we need to guess a consensus alphabet if one isn't specified

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
None